Stem-loop sly-MIR408

Accession

MI0033679

Description

Solanum lycopersicum sly-MIR408 precursor miRNA

Literature search

21 open access papers mention sly-MIR408
(259 sentences)

Sequence

914759 reads, 9650.0 reads per million, 82 experiments

gauagACGGGGACGAGCCAGAGCAUGagaugugcaauuuuugcuuugccuauuccaUGCACUGCCUCUUCCCUGGCUcuccu
((.((.((((((.(((.(((.(((((.((((.((((........)))).)))).))))).))).))).)))))).)).))..

Structure

--  u  A      C   C   A     a    u    uuu 
  ga ag CGGGGA GAG CAG GCAUG gaug gcaa   u
  || || |||||| ||| ||| ||||| |||| ||||    
  cu UC GUCCCU CUC GUC CGUac uuau cguu   u
uc  c  G      U   C   A     c    c    ucg 

Annotation confidence High

Genome context

chr1: 91040515-91040596 [-]

Mature sly-miR408-5p

• Accession: MIMAT0042005
• Description: Solanum lycopersicum sly-miR408-5p mature miRNA
• Sequence: 6 - ACGGGGACGAGCCAGAGCAUG - 26
• Evidence: experimental ; Illumina [1]

Mature sly-miR408-3p

• Accession: MIMAT0055743
• Description: Solanum lycopersicum sly-miR408-3p mature miRNA
• Sequence: 57 - UGCACUGCCUCUUCCCUGGCU - 77
• Evidence: experimental ; unknown

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195