Stem-loop sly-MIR319d

Accession

MI0033681

Description

Solanum lycopersicum sly-MIR319d precursor miRNA

Literature search

22 open access papers mention sly-MIR319d
(144 sentences)

Sequence

14802 reads, 374.0 reads per million, 82 experiments

agagaAGGAAACUGUUUAGUCCAACCcaaggugggguauuggaacugaucuuugcugcugaaucauuggcucaugagcaugucaaagaagaugauugaacauucuggacauguucuugcuccaaugaugcaggagcugagcucgguuuuucaccgccuuuucUUGGACUGAAGGGUUUCCUUCccuuc
((.((((((((((.((((((((((...(((((((......((((((((.(((.(((.(((.((((((((..((.(((((((((..((((..(......)..)))).))))))))).))..)))))))).))).))).))).))))))))...)))))))...)))))))))).)))))))))).))..

Structure

--  a          G          CCc       gguauu        u   u   g   a        cu  u         aa    ga ga 
  ag gaAGGAAACU UUUAGUCCAA   aaggugg      ggaacuga cuu gcu cug aucauugg  ca gagcauguc  agaa  u  u
  || |||||||||| ||||||||||   |||||||      |||||||| ||| ||| ||| ||||||||  || |||||||||  ||||  |   
  uc CUUCCUUUGG AAGUCAGGUU   uuccgcc      uuuuggcu gag cga gac uaguaacc  gu cuuguacag  ucuu  a  u
cu  c          G          cuu       ---acu        c   u   g   g        uc  u         -g    ac ag 

Annotation confidence High

Genome context

chr3: 67741504-67741691 [+]

Mature sly-miR319d-5p

• Accession: MIMAT0042007
• Description: Solanum lycopersicum sly-miR319d-5p mature miRNA
• Sequence: 6 - AGGAAACUGUUUAGUCCAACC - 26
• Evidence: experimental ; Illumina [1]

Mature sly-miR319d-3p

• Accession: MIMAT0055745
• Description: Solanum lycopersicum sly-miR319d-3p mature miRNA
• Sequence: 163 - UUGGACUGAAGGGUUUCCUUC - 183
• Evidence: experimental ; unknown

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195