Stem-loop sly-MIR172d

Accession

MI0033682

Description

Solanum lycopersicum sly-MIR172d precursor miRNA

Literature search

31 open access papers mention sly-MIR172d
(124 sentences)

Sequence

79308 reads, 4322.0 reads per million, 79 experiments

cggguGGAGCAUCAUCAAGAUUCACAuagcuauauuagggcuuuuauaauuuuuaaaaacccuacgggcgaugugugGGAAUCUUGAUGAUGCUGCAGcggca
(.(.((.((((((((((((((((((((((((....(((((.(((((.......))))).)))))..)))..)))))..)))))))))))))))).)).).)..

Structure

-- g g  G                --     --   auau     c     ua 
  c g uG AGCAUCAUCAAGAUUC  ACAua  gcu    uaggg uuuua  a
  | | || ||||||||||||||||  |||||  |||    ||||| |||||  u
  g c AC UCGUAGUAGUUCUAAG  ugugu  cgg    auccc aaaau  u
ac g G  G                Gg     ag   --gc     a     uu 

Annotation confidence High

Genome context

chr5: 63201346-63201448 [+]

Mature sly-miR172d-5p

• Accession: MIMAT0055746
• Description: Solanum lycopersicum sly-miR172d-5p mature miRNA
• Sequence: 6 - GGAGCAUCAUCAAGAUUCACA - 26
• Evidence: experimental ; unknown

Mature sly-miR172d-3p

• Accession: MIMAT0042008
• Description: Solanum lycopersicum sly-miR172d-3p mature miRNA
• Sequence: 78 - GGAAUCUUGAUGAUGCUGCAG - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195