Stem-loop sly-MIR10529

Accession

MI0033683

Description

Solanum lycopersicum sly-MIR10529 precursor miRNA

Sequence

aacauAACGAGUGAGACUUGCUCAGUUGGuaaaacaccuccacggucuaaccaauuaucuuggucgaggguucaagucauguuggaagcaaugugagggcguccagcuuagcaagccucauccguuuugcuuc
..((.((((.(((((.((((((.((((((....((.(((.((((......(((((...(((((........)))))....)))))......)))).))).)))))))).)))))).))))).)))).))....

Structure

--aa  u    A     A      C      uaaa  a   c    gucuaa     -uau     ucg 
    ca AACG GUGAG CUUGCU AGUUGG    ac ccu cacg      ccaau    cuugg   a
    || |||| ||||| |||||| ||||||    || ||| ||||      |||||    |||||    
    gu uugc uacuc gaacga ucgacc    ug ggg gugu      gguug    gaacu   g
cuuc  u    c     c      u      ----  c   a    aacgaa     uacu     ugg 

Annotation confidence Not enough data

Genome context

chr11: 1186495-1186627 [+]

Mature sly-miR10529

• Accession: MIMAT0042009
• Description: Solanum lycopersicum sly-miR10529 mature miRNA
• Sequence: 6 - AACGAGUGAGACUUGCUCAGUUGG - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195