Stem-loop sly-MIR827

Accession

MI0033684

Description

Solanum lycopersicum sly-MIR827 precursor miRNA

Literature search

12 open access papers mention sly-MIR827
(21 sentences)

Sequence

5067 reads, 52.0 reads per million, 71 experiments

auuugUUUGUUGAUGGUCAUCUAUUCaucauaucauuuggcauaguuuuuggaaccauuaauaugccaugaUUAGAUGAACAUCAACAAACAucuuc
...((((((((((((.(((((((.(((..........(((((((.((..((....))..)))))))))))).))))))).)))))))))))).....

Structure

--auu            G       U   ucauaucauu       g  uu  g 
     ugUUUGUUGAUG UCAUCUA UCa          uggcaua uu  ug a
     |||||||||||| ||||||| |||          ||||||| ||  ||  
     ACAAACAACUAC AGUAGAU agu          accguau aa  ac a
cuucu            A       U   ----------       -  uu  c 

Annotation confidence High

Genome context

chr12: 65453531-65453627 [+]

Mature sly-miR827-5p

• Accession: MIMAT0055748
• Description: Solanum lycopersicum sly-miR827-5p mature miRNA
• Sequence: 6 - UUUGUUGAUGGUCAUCUAUUC - 26
• Evidence: experimental ; unknown

Mature sly-miR827-3p

• Accession: MIMAT0042010
• Description: Solanum lycopersicum sly-miR827-3p mature miRNA
• Sequence: 72 - UUAGAUGAACAUCAACAAACA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195