Stem-loop sly-MIR530

Accession

MI0033685

Description

Solanum lycopersicum sly-MIR530 precursor miRNA

Literature search

5 open access papers mention sly-MIR530
(9 sentences)

Sequence

152334 reads, 7197.0 reads per million, 80 experiments

uuaucUGCAUUUGCACCUGCACCUUagugaacgaauuaguucgcguauaauucgugcagaaAGGUGUAGGUGUUCAUGCAGAcaaaa
...(((((((..(((((((((((((..((.((((((((.........)))))))).))..)))))))))))))..))))))).....

Structure

--uua       UU             ag  a        guu 
     ucUGCAU  GCACCUGCACCUU  ug acgaauua   c
     |||||||  |||||||||||||  || ||||||||   g
     AGACGUA  UGUGGAUGUGGAa  ac ugcuuaau   c
aaaac       CU             ag  g        aug 

Annotation confidence Medium

Genome context

chr9: 1677560-1677646 [+]

Mature sly-miR530-5p

• Accession: MIMAT0055749
• Description: Solanum lycopersicum sly-miR530-5p mature miRNA
• Sequence: 6 - UGCAUUUGCACCUGCACCUU - 25
• Evidence: experimental ; unknown

Mature sly-miR530-3p

• Accession: MIMAT0042011
• Description: Solanum lycopersicum sly-miR530-3p mature miRNA
• Sequence: 62 - AGGUGUAGGUGUUCAUGCAGA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195