Stem-loop sly-MIR393

Accession

MI0033686

Description

Solanum lycopersicum sly-MIR393 precursor miRNA

Literature search

33 open access papers mention sly-MIR393
(122 sentences)

Sequence

40686 reads, 1230.0 reads per million, 81 experiments

auuauUCCAAAGGGAUCGCAUUGAUCCUGuguuccaaauuaauuaaccaugggacuaugggAUCAUGCGAUCUCUUCGGAAUUcucc
...(((((.((((((((((((.((((((((((((((.............)))))).)))))))))))))))))))).))))).....

Structure

--auu     A            U        -      aauua 
     auUCC AAGGGAUCGCAU GAUCCUGu guucca     a
     ||||| |||||||||||| |||||||| ||||||     u
     UAAGG UUCUCUAGCGUA CUAgggua cagggu     u
ccucU     C            -        u      accaa 

Annotation confidence High

Genome context

chr3: 3081745-3081831 [+]

Mature sly-miR393-5p

• Accession: MIMAT0055750
• Description: Solanum lycopersicum sly-miR393-5p mature miRNA
• Sequence: 6 - UCCAAAGGGAUCGCAUUGAUCCUG - 29
• Evidence: experimental ; unknown

Mature sly-miR393-3p

• Accession: MIMAT0042012
• Description: Solanum lycopersicum sly-miR393-3p mature miRNA
• Sequence: 62 - AUCAUGCGAUCUCUUCGGAAUU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195