Stem-loop sly-MIR10530

Accession

MI0033687

Description

Solanum lycopersicum sly-MIR10530 precursor miRNA

Sequence

acauguugaauguuggggaacgaacgucuaagguuugggucaacgaucucaauguugaugcguccgcuuguuguugaugcugcuccaaaagguucaacauugggauuuuagcccaaacaucagACGUCCCUUCCCCAUCGUUCAACAucguu
..((((((((((.(((((((.(.((((((...((((((((....((((((((((((((.(((((.((.....)).)))))....((....)).))))))))))))))...))))))))...)))))).).))))))).))))))))))....

Structure

--ac          u       c a      aag        caac              ------------u     c  u 
    auguugaaug uggggaa g acgucu   guuugggu    gaucucaauguuga             gcguc gc u
    |||||||||| ||||||| | ||||||   ||||||||    ||||||||||||||             ||||| || g
    uACAACUUGC ACCCCUU C UGCAga   caaacccg    uuaggguuacaacu             cguag ug u
uugc          U       C C      cua        -auu              uggaaaaccucgu     u  u 

Annotation confidence Not enough data

Genome context

chr9: 3057781-3057932 [-]

Mature sly-miR10530

• Accession: MIMAT0042013
• Description: Solanum lycopersicum sly-miR10530 mature miRNA
• Sequence: 124 - ACGUCCCUUCCCCAUCGUUCAACA - 147
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195