Stem-loop sly-MIR398a

Accession

MI0033688

Description

Solanum lycopersicum sly-MIR398a precursor miRNA

Literature search

18 open access papers mention sly-MIR398a
(55 sentences)

Sequence

2041094 reads, 22631.0 reads per million, 81 experiments

caauaGGGUUGAUUUGAGAACAUAUGUaugugcauauuuuguuuguaacaauuuaccguuuauaaauaugacacaUAUGUUCUCAGGUCGCCCCUGuagac
..((((((.((((((((((((((((((..((.(((((((.....((((....)))).......))))))))))))))))))))))))))).))))))....

Structure

--ca      U                  au  g       --uguuu    c 
    auaGGG UGAUUUGAGAACAUAUGU  gu cauauuu       guaa a
    |||||| ||||||||||||||||||  || |||||||       ||||  
    uGUCCC GCUGGACUCUUGUAUaca  ca guauaaa       cauu a
caga      C                  --  -       uauuugc    u 

Annotation confidence High

Genome context

chr11: 50299414-50299514 [-]

Mature sly-miR398a-5p

• Accession: MIMAT0055752
• Description: Solanum lycopersicum sly-miR398a-5p mature miRNA
• Sequence: 6 - GGGUUGAUUUGAGAACAUAUGU - 27
• Evidence: experimental ; unknown

Mature sly-miR398a-3p

• Accession: MIMAT0042014
• Description: Solanum lycopersicum sly-miR398a-3p mature miRNA
• Sequence: 76 - UAUGUUCUCAGGUCGCCCCUG - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195