miRBase entry: sly-MIR7981e

Stem-loop sly-MIR7981e


Accession
MI0033689
Description
Solanum lycopersicum sly-MIR7981e precursor miRNA


Sequence

216614 reads, 6104.0 reads per million, 82 experiments
cuagcucgaaauuucagAGACACACUUAUAUUAUACUAAGGuccuguuaccccugaacuuauuuuauaaguaacuuucuaccucuuuucgaucuacgugacauuaacuuggaaaagaaaagucaaccagcguuggauccacaagauagugucacguagaucgaaaugagauagaaaauuauuaauaaaauaaguucagagguaauaaaaccuuaauaguauAAGUGUGUCUCUGAGAUUUCGGAUauagg
(((..(((((((((((((((((((((((((((((..((((((..(((((((.(((((((((((((((.(((((.((((((.(((.((((((((((((((((((((.((((...........(((((....))))).....)))).)))))))))))))))))))).))).)))))).))))).))))))))))))))).)))))))..)))))))))))))))))))))))))))))))))))...))).

Structure
-   -gc                             AC      cc       c               a     c      c   u                    a    gaaaagaaaag     c 
 cua   ucgaaauuucagAGACACACUUAUAUUAU  UAAGGu  uguuacc cugaacuuauuuuau aguaa uuucua cuc uuucgaucuacgugacauua cuug           ucaac a
 |||   |||||||||||||||||||||||||||||  ||||||  ||||||| ||||||||||||||| ||||| |||||| ||| |||||||||||||||||||| ||||           |||||  
 gau   GGCUUUAGAGUCUCUGUGUGAAuaugaua  auucca  auaaugg gacuugaauaaaaua uuauu aaagau gag aaagcuagaugcacugugau gaac           gguug g
g   aUA                             --      aa       a               a     a      a   u                    a    ------accua     c 


Annotation confidence Low
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Genome context
chr10: 59751092-59751341 [+]

Database links

Mature sly-miR7981e-5p

Accession MIMAT0055753
Description Solanum lycopersicum sly-miR7981e-5p mature miRNA
Sequence 18 - AGACACACUUAUAUUAUACUAAGG - 41
Evidence experimental
unknown

Mature sly-miR7981e-3p

Accession MIMAT0042015
Description Solanum lycopersicum sly-miR7981e-3p mature miRNA
Sequence 222 - AAGUGUGUCUCUGAGAUUUCGGAU - 245
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195