Stem-loop sly-MIR7981e

Accession

MI0033689

Description

Solanum lycopersicum sly-MIR7981e precursor miRNA

Sequence

cuagcucgaaauuucagagacacacuuauauuauacuaagguccuguuaccccugaacuuauuuuauaaguaacuuucuaccucuuuucgaucuacgugacauuaacuuggaaaagaaaagucaaccagcguuggauccacaagauagugucacguagaucgaaaugagauagaaaauuauuaauaaaauaaguucagagguaauaaaaccuuaauaguauAAGUGUGUCUCUGAGAUUUCGGAUauagg
(((..(((((((((((((((((((((((((((((..((((((..(((((((.(((((((((((((((.(((((.((((((.(((.((((((((((((((((((((.((((...........(((((....))))).....)))).)))))))))))))))))))).))).)))))).))))).))))))))))))))).)))))))..)))))))))))))))))))))))))))))))))))...))).

Structure

-   -gc                             ac      cc       c               a     c      c   u                    a    gaaaagaaaag     c 
 cua   ucgaaauuucagagacacacuuauauuau  uaaggu  uguuacc cugaacuuauuuuau aguaa uuucua cuc uuucgaucuacgugacauua cuug           ucaac a
 |||   |||||||||||||||||||||||||||||  ||||||  ||||||| ||||||||||||||| ||||| |||||| ||| |||||||||||||||||||| ||||           |||||  
 gau   GGCUUUAGAGUCUCUGUGUGAAuaugaua  auucca  auaaugg gacuugaauaaaaua uuauu aaagau gag aaagcuagaugcacugugau gaac           gguug g
g   aUA                             --      aa       a               a     a      a   u                    a    ------accua     c 

Annotation confidence Not enough data

Genome context

chr10: 59751092-59751341 [+]

Mature sly-miR7981e

• Accession: MIMAT0042015
• Description: Solanum lycopersicum sly-miR7981e mature miRNA
• Sequence: 222 - AAGUGUGUCUCUGAGAUUUCGGAU - 245
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195