Stem-loop sly-MIR399b

Accession

MI0033690

Description

Solanum lycopersicum sly-MIR399b precursor miRNA

Literature search

1 open access papers mention sly-MIR399b
(2 sentences)

Sequence

7213 reads, 186.0 reads per million, 76 experiments

ugauaGGGCUACUCUCUAUUGGCAUGcaauuguauauuucagcugacaCGCCAAAGGAGAGCUGCCCUGuuacu
(((((((((..((((((.(((((.((((.(((.......))).)).)).))))).))))))..)))))))))..

Structure

--         UA      A     A  -  a   ua 
  ugauaGGGC  CUCUCU UUGGC UG ca uug  u
  |||||||||  |||||| ||||| || || |||  a
  auuGUCCCG  GAGAGG AACCG ac gu gac  u
uc         UC      A     C  a  c   uu 

Annotation confidence High

Genome context

chr3: 3816894-3816967 [-]

Mature sly-miR399b-5p

• Accession: MIMAT0042016
• Description: Solanum lycopersicum sly-miR399b-5p mature miRNA
• Sequence: 6 - GGGCUACUCUCUAUUGGCAUG - 26
• Evidence: experimental ; Illumina [1]

Mature sly-miR399b-3p

• Accession: MIMAT0055754
• Description: Solanum lycopersicum sly-miR399b-3p mature miRNA
• Sequence: 49 - CGCCAAAGGAGAGCUGCCCUG - 69
• Evidence: experimental ; unknown

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195