Stem-loop sly-MIR10531

Accession

MI0033691

Description

Solanum lycopersicum sly-MIR10531 precursor miRNA

Sequence

2535 reads, 47.0 reads per million, 77 experiments

auaucUGGGGUCCUAGUAGAGUCGGUUCuacauuggguguuaaguguuuugaguaaucaucauugaaaguaacauacuuaaaacccaauguugaACUGACUCUACUCGGAUUCCAAAuaucg
((((.((((((((.((((((((((((((.(((((((((.((((((((.(((.....(((....)))...))).)))))))).))))))))).)))))))))))))).)))))))).))))..

Structure

--    c        U              u         g        u   aguaa   u 
  auau UGGGGUCC AGUAGAGUCGGUUC acauugggu uuaagugu uug     uca c
  |||| |||||||| |||||||||||||| ||||||||| |||||||| |||     |||  
  uauA ACCUUAGG UCAUCUCAGUCAag uguaaccca aauucaua aau     agu a
gc    A        C              u         a        c   --gaa   u 

Annotation confidence Medium

Genome context

chr6: 35003064-35003185 [+]

Mature sly-miR10531-5p

• Accession: MIMAT0042017
• Description: Solanum lycopersicum sly-miR10531-5p mature miRNA
• Sequence: 6 - UGGGGUCCUAGUAGAGUCGGUUC - 28
• Evidence: experimental ; Illumina [1]

Mature sly-miR10531-3p

• Accession: MIMAT0055755
• Description: Solanum lycopersicum sly-miR10531-3p mature miRNA
• Sequence: 95 - ACUGACUCUACUCGGAUUCCAAA - 117
• Evidence: experimental ; unknown

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195