miRBase entry: sly-MIR10532

Stem-loop sly-MIR10532


Accession
MI0033692
Description
Solanum lycopersicum sly-MIR10532 precursor miRNA


Sequence

298852 reads, 7255.0 reads per million, 82 experiments
uauguuugaaAUCUCAGAGACACACUUAUACUAUucuaauaggaccuuuguauaguauAAGUGUGUCUCUGAGAUUUCGGGCauagg
((((((((((((((((((((((((((((((((((..(((........))).))))))))))))))))))))))))))))))))))..

Structure
--                                  uc   uag 
  uauguuugaaAUCUCAGAGACACACUUAUACUAU  uaa   g
  ||||||||||||||||||||||||||||||||||  |||    
  auaCGGGCUUUAGAGUCUCUGUGUGAAuaugaua  guu   a
gg                                  -u   ucc 


Annotation confidence Low
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Genome context
chr1: 6382532-6382618 [+]

Database links

Mature sly-miR10532-5p

Accession MIMAT0055756
Description Solanum lycopersicum sly-miR10532-5p mature miRNA
Sequence 11 - AUCUCAGAGACACACUUAUACUAU - 34
Evidence experimental
unknown

Mature sly-miR10532-3p

Accession MIMAT0042018
Description Solanum lycopersicum sly-miR10532-3p mature miRNA
Sequence 59 - AAGUGUGUCUCUGAGAUUUCGGGC - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195