Stem-loop sly-MIR10533

Accession

MI0033693

Description

Solanum lycopersicum sly-MIR10533 precursor miRNA

Sequence

aaagaUCUUAUGAAUUCUAGGUCUUCUuucaucagcccaauuucuucuuuuauaaaaacaauugaauaagcuugaaauuuaacaaauuauuguaguuuuugauuagaagauuuaugaauaguaagaagucccgcuucucaaugagugauagaccacucucuaugaaucuucuacucaaaaacuuuaaaaaauugcuuaauuucgaagcucagucaauugcuucaauaaaggaagaaauuaggccggugaaagacaacuuagaguucauaagaucuaua
..((((((((((((((((((((..(((((((((.(((.(((((((((((((((..((.(((((((...(((((((((((...(((.((.(((.(((((((((.(((((((((((((.......((((((...))))))....(((((......)))))..))))))))))))).))))))))).))).)).)))...)))))).)))))...))))))).))..))))))))))))))).))).)))))))))..))))))))))))))))))))...

Structure

-aa                    CU         a   c               aa  a       aua     -      uaa   a  a   u         u             ---------------aauagua      c 
   agaUCUUAUGAAUUCUAGGU  UCUuucauc gcc aauuucuucuuuuau  aa caauuga   agcuu gaaauu   caa uu uug aguuuuuga uagaagauuuaug                      agaagu  
   ||||||||||||||||||||  ||||||||| ||| |||||||||||||||  || |||||||   ||||| ||||||   ||| || ||| ||||||||| |||||||||||||                      |||||| c
   ucuagaauacuugagauuca  agaaagugg cgg uuaaagaaggaaaua  uu guuaacu   ucgaa cuuuaa   guu aa aau ucaaaaacu aucuucuaaguau                      ucuucg  
aua                    ac         c   a               ac  c       gac     g      uuc   a  a   u         c             cucucaccagauagugaguaac      c 

Annotation confidence Not enough data

Genome context

chr12: 1443488-1443765 [+]

Mature sly-miR10533

• Accession: MIMAT0042019
• Description: Solanum lycopersicum sly-miR10533 mature miRNA
• Sequence: 6 - UCUUAUGAAUUCUAGGUCUUCU - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195