Stem-loop sly-MIR10534

Accession

MI0033694

Description

Solanum lycopersicum sly-MIR10534 precursor miRNA

Sequence

gacucCAAAAUACCCUUGUCAUCCAAcauuggauucaaaauugaccacuuauuuaacgguccauuuugaacaaaaagguggaugacaaggguauuuuggagccaa
(.(((((((((((((((((((((((........((((((((.((((...........)))).))))))))........))))))))))))))))))))))).)..

Structure

-- a                       Acauugga        u    acuu 
  g cucCAAAAUACCCUUGUCAUCCA        uucaaaau gacc    a
  | |||||||||||||||||||||||        |||||||| ||||    u
  c gagguuuuaugggaacaguaggu        aaguuuua cugg    u
aa c                       ggaaaaac        c    caau 

Annotation confidence Not enough data

Genome context

chr4: 47776933-47777037 [+]

Mature sly-miR10534

• Accession: MIMAT0042020
• Description: Solanum lycopersicum sly-miR10534 mature miRNA
• Sequence: 6 - CAAAAUACCCUUGUCAUCCAA - 26
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195