Stem-loop sly-MIR10535a

Accession

MI0033696

Description

Solanum lycopersicum sly-MIR10535a precursor miRNA

Sequence

aagggUUGGCAUAAGUUUGUGAAAGCCGGagauuuaggaguaaaguacaauuauuuucgcaaauaauuguaucuuuugcucuuaaaccuuuagcuuuaacaaauuugugccaacccuuug
((((((((((((((((((((.(((((.((((.((((((((((((((((((((((((....))))))))))))..)))))))))))).)))).))))).))))))))))))))))))))..

Structure

--                    G     C    a            --            u 
  aagggUUGGCAUAAGUUUGU AAAGC GGag uuuaggaguaaa  guacaauuauuu c
  |||||||||||||||||||| ||||| |||| ||||||||||||  ||||||||||||  
  uucccaaccguguuuaaaca uuucg uuuc aaauucucguuu  uauguuaauaaa g
gu                    a     a    c            uc            c 

Annotation confidence Not enough data

Genome context

chr8: 3441653-3441772 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR10535a

Mature sly-miR10535a

• Accession: MIMAT0042022
• Description: Solanum lycopersicum sly-miR10535a mature miRNA
• Sequence: 6 - UUGGCAUAAGUUUGUGAAAGCCGG - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195