Stem-loop sly-MIR6025

Accession

MI0033697

Description

Solanum lycopersicum sly-MIR6025 precursor miRNA

Literature search

1 open access papers mention sly-MIR6025
(4 sentences)

Sequence

26798 reads, 769.0 reads per million, 76 experiments

ugguaUACCAAUAAUUGAGAUAACAUCuagguuuaaugaucuuuugaguagcuaauuuguauaguuauuucauguacacuugcacaaaaauaUUAUUGAACCUUGAUGUUAUCUcaguguuggcaugcauaa
..((((.((((((.(((((((((((((.((((((((((((.((((..((.((.....((((((.........))))))...)))).)))).)))))))))))).))))))))))))))))))).))))....

Structure

--ug    A      A             u            c    ga  a  uaauu      guu 
    guaU CCAAUA UUGAGAUAACAUC agguuuaaugau uuuu  gu gc     uguaua   a
    |||| |||||| ||||||||||||| |||||||||||| ||||  || ||     ||||||   u
    cgua gguugu gacUCUAUUGUAG UCCAAGUUAUUa aaaa  ca cg     acaugu   u
aaua    c      -             U            u    -a  -  --uuc      acu 

Annotation confidence Medium

Genome context

chr4: 421941-422072 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR6025

Mature sly-miR6025-5p

• Accession: MIMAT0042023
• Description: Solanum lycopersicum sly-miR6025-5p mature miRNA
• Sequence: 6 - UACCAAUAAUUGAGAUAACAUC - 27
• Evidence: experimental ; Illumina [1]

Mature sly-miR6025-3p

• Accession: MIMAT0055761
• Description: Solanum lycopersicum sly-miR6025-3p mature miRNA
• Sequence: 93 - UUAUUGAACCUUGAUGUUAUCU - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195