Stem-loop sly-MIR10536

Accession

MI0033698

Description

Solanum lycopersicum sly-MIR10536 precursor miRNA

Sequence

aaggaagcugacgauuagaacaugucaaaggaaucgguccaaugcagcugacuaacgugcuuauaucaaguguuguaaacucguuaguuaacuuuguuAGACAUGUUCUAAUCGUCAGCUUCcuucu
((((((((((((((((((((((((((...(((.....)))...((((.(((((((((.(.(((((........))))).).)))))))))...))))..))))))))))))))))))))))))))..

Structure

--                          aaaggaaucgguccaau    --c         u c     uca 
  aaggaagcugacgauuagaacauguc                 gcag   ugacuaacg g uuaua   a
  ||||||||||||||||||||||||||                 ||||   ||||||||| | |||||    
  uucCUUCGACUGCUAAUCUUGUACAG                 uguu   auugauugc c aaugu   g
uc                          ---------------Au    uca         u a     ugu 

Annotation confidence Not enough data

Genome context

chr4: 64023701-64023827 [-]

Mature sly-miR10536

• Accession: MIMAT0042024
• Description: Solanum lycopersicum sly-miR10536 mature miRNA
• Sequence: 99 - AGACAUGUUCUAAUCGUCAGCUUC - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195