Stem-loop sly-MIR10537

Accession

MI0033699

Description

Solanum lycopersicum sly-MIR10537 precursor miRNA

Sequence

uucuacaacguacguaggguaaguggauggcugaaauucguuagccuagccguggcccuggaaauacuucucugcaggacaagcuucauuuccauuaccggauaucaacagaaagguugaaaaagacaacaauguagaggauuugguggaguguggaaagauuugaaugcaaacuuaucgaagauugaucaucauggauuuaagccauccAUUUACCCCAAGUUCGUUGUCaaacg
....((((((.((...((((((((((((((((.((((((((..(((.......)))((((.(..........).))))....(((((((((((((((((((((.((.(((.....(((......))).....))).))..))))))))....)))))))....)))).))......(((((...)))))....)))))))).))))))))))))))))...)).))))))......

Structure

--uucu      u  gua                g        uagccuagccguggcccuggaaauacuucucugcaggacaa  -    ----       ----        -a  a   gaaag   ga 
      acaacg ac   ggguaaguggauggcu aaauucgu                                         gc uuca    uuuccau    uaccggau  uc aca     guu  a
      |||||| ||   |||||||||||||||| ||||||||                                         || ||||    |||||||    ||||||||  || |||     |||   
      UGUUGC UG   CCCAUUUAccuaccga uuuaggua                                         cg aagu    aaaggug    gugguuua  ag ugu     cag  a
gcaaaC      U  AAC                a        ------------------cuacuaguuagaagcuauucaaa  u    uuag       ugag        gg  a   aacaa   aa 

Annotation confidence Not enough data

Genome context

chr8: 395910-396145 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR10537

Mature sly-miR10537

• Accession: MIMAT0042025
• Description: Solanum lycopersicum sly-miR10537 mature miRNA
• Sequence: 211 - AUUUACCCCAAGUUCGUUGUC - 231
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195