miRBase entry: sly-MIR7981f

Stem-loop sly-MIR7981f


Accession
MI0033700
Description
Solanum lycopersicum sly-MIR7981f precursor miRNA


Sequence

637521 reads, 21451.0 reads per million, 82 experiments
uaugcucaaaaucucagAGACACACUUAUACUAUACUAAGGuccuauuaccccccuuaacuuauuuuauuaauaauuuuuuaccccuuuuuuagcuuacguggcacuaucuugugggcccaacgaugguugacuuuuuuucugaacuaaugccacuuaggcuaaaaagggguagaaaauuacauauaaaauaaguucagggggguaauaggaccuuaguauaguauAAGUGUGUCUCUGGAAUUUCGGGCauagg
(((((((.((((.(((((((((((((((((((((((((((((((((((((((((((.((((((((((((...(((((((((((((((((((.((((((.((((((.((((..((.((((.......)))).)).........))..)).)))))).)))))))))))))))))))))))))...)))))))))))).))))))))))))))))))))))))))))))))))))))))))).)))).)))))))..

Structure
--       a    c                                           u            uaa                   u      c      c  --  -------uu  g    ca 
  uaugcuc aaau ucagAGACACACUUAUACUAUACUAAGGuccuauuaccccccu aacuuauuuuau   uaauuuuuuaccccuuuuu agcuua guggca ua  uc         gu ggcc  a
  ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||| |||||| |||||| ||  ||         || ||||  c
  auaCGGG UUUA GGUCUCUGUGUGAAuaugauaugauuccaggauaaugggggga uugaauaaaaua   auuaaaagauggggaaaaa ucggau caccgu au  ag         ca uugg  g
gg       C    A                                           c            uac                   -      u      a  ca  ucuuuuuuu  g    ua 


Annotation confidence Low
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Genome context
chr8: 34556987-34557241 [+]

Database links

Mature sly-miR7981f-5p

Accession MIMAT0055764
Description Solanum lycopersicum sly-miR7981f-5p mature miRNA
Sequence 18 - AGACACACUUAUACUAUACUAAGG - 41
Evidence experimental
unknown

Mature sly-miR7981f-3p

Accession MIMAT0042026
Description Solanum lycopersicum sly-miR7981f-3p mature miRNA
Sequence 227 - AAGUGUGUCUCUGGAAUUUCGGGC - 250
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195