Stem-loop sly-MIR10535b

Accession

MI0033701

Description

Solanum lycopersicum sly-MIR10535b precursor miRNA

Sequence

aagggUUGGCAUGAGUUUGUGAAAGCCGGagguuuaggagcaaaguacaauuauuuucgcaaauaauuauaucuuuugcucuuaaaccuuuagcuuuaacaaauuugugccaacccuuug
((((((((((((((((((((.(((((.((((((((((((((((((((.((((((((....)))))))).)))..))))))))))))))))).))))).))))))))))))))))))))..

Structure

--                    G     C                 --   c        u 
  aagggUUGGCAUGAGUUUGU AAAGC GGagguuuaggagcaaa  gua aauuauuu c
  |||||||||||||||||||| ||||| |||||||||||||||||  ||| ||||||||  
  uucccaaccguguuuaaaca uuucg uuuccaaauucucguuu  uau uuaauaaa g
gu                    a     a                 uc   a        c 

Annotation confidence Not enough data

Genome context

chr8: 3438186-3438305 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sly-MIR10535b

Mature sly-miR10535b

• Accession: MIMAT0042027
• Description: Solanum lycopersicum sly-miR10535b mature miRNA
• Sequence: 6 - UUGGCAUGAGUUUGUGAAAGCCGG - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195