Stem-loop sly-MIR169f

Accession

MI0033702

Description

Solanum lycopersicum sly-MIR169f precursor miRNA

Literature search

16 open access papers mention sly-MIR169f
(45 sentences)

Sequence

39168 reads, 1489.0 reads per million, 77 experiments

ucugaUAGCCAAGGAUGACUUGCCUAAAAucauuuuuaugaagggucuuaacuaauuaaacuuuaguuacuaaaauuaaaguuuauauuauaugaucuuaaaauuggaauuuUAGGCGUUGUCUGAGGCUAACUGaga
((.(.(((((..(((((((..(((((((((((.(((((....(((((.((..((((((((((((((((.....)))))))))))).)))))).)))))))))).))..))))))))))))))))..))))).).))..

Structure

--  u a     AA       UU         --  u     ugaa     u  ac    -            a 
  uc g UAGCC  GGAUGAC  GCCUAAAAu  ca uuuua    ggguc ua  uaau uaaacuuuaguu c
  || | |||||  |||||||  |||||||||  || |||||    ||||| ||  |||| |||||||||||| u
  aG C AUCGG  UCUGUUG  CGGAUuuua  gu aaaau    ucuag au  auua auuugaaauuaa a
ag  U A     AG       --         ag  u     ----     u  --    u            a 

Annotation confidence High

Genome context

chr3: 60099187-60099324 [+]

Mature sly-miR169f-5p

• Accession: MIMAT0055766
• Description: Solanum lycopersicum sly-miR169f-5p mature miRNA
• Sequence: 6 - UAGCCAAGGAUGACUUGCCUAAAA - 29
• Evidence: experimental ; unknown

Mature sly-miR169f-3p

• Accession: MIMAT0042028
• Description: Solanum lycopersicum sly-miR169f-3p mature miRNA
• Sequence: 113 - UAGGCGUUGUCUGAGGCUAACUG - 135
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195