miRBase entry: sly-MIR7981a

Stem-loop sly-MIR7981a


Accession
MI0033703
Description
Solanum lycopersicum sly-MIR7981a precursor miRNA


Sequence

42954 reads, 1073.0 reads per million, 77 experiments
uuucuACCCCUUUUCGGCCUACGUGGCACuaacuugaaaaaaaagucaaccaacguugggccuACAAGAUAGUGUCACGUAGaccgaaaagggguagaaaau
(((((((((((((((((.(((((((((((((.((((.........(((((....))))).....)))).))))))))))))).)))))))))))))))))..

Structure
--                 C             a    aaaaaaaag     c 
  uuucuACCCCUUUUCGG CUACGUGGCACua cuug         ucaac a
  ||||||||||||||||| ||||||||||||| ||||         |||||  
  aaagauggggaaaagcc GAUGCACUGUGAU GAAC         gguug a
ua                 a             A    ----Auccg     c 


Annotation confidence Low
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Genome context
chr5: 9815547-9815648 [+]

Database links

Mature sly-miR7981a-5p

Accession MIMAT0042029
Description Solanum lycopersicum sly-miR7981a-5p mature miRNA
Sequence 6 - ACCCCUUUUCGGCCUACGUGGCAC - 29
Evidence experimental
Illumina [1]

Mature sly-miR7981a-3p

Accession MIMAT0055767
Description Solanum lycopersicum sly-miR7981a-3p mature miRNA
Sequence 64 - ACAAGAUAGUGUCACGUAG - 82
Evidence experimental
unknown

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195