miRBase entry: sly-MIR7981b

Stem-loop sly-MIR7981b


Accession
MI0033704
Description
Solanum lycopersicum sly-MIR7981b precursor miRNA


Sequence

49324 reads, 1400.0 reads per million, 77 experiments
uuuuuACCCCUUUUUAGCUUACGUGGCACuaucuugugggcucaacgaugauugacuuuuuuuuugaacuaguGCCACGUAGACUAAAAAGGGGUAgaaaau
(((((((((((((((((.(((((((((((((((....(((.((((......))))))).......))..))))))))))))).)))))))))))))))))..

Structure
--                 C             --  ---uugu   c    cg 
  uuuuuACCCCUUUUUAG UUACGUGGCACua  uc       ggg ucaa  a
  ||||||||||||||||| |||||||||||||  ||       ||| ||||   
  aaagAUGGGGAAAAAUC GAUGCACCGugau  ag       uuc aguu  u
ua                 A             ca  uuuuuuu   -    ag 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr1: 2860001-2860102 [+]

Database links

Mature sly-miR7981b-5p

Accession MIMAT0042030
Description Solanum lycopersicum sly-miR7981b-5p mature miRNA
Sequence 6 - ACCCCUUUUUAGCUUACGUGGCAC - 29
Evidence experimental
Illumina [1]

Mature sly-miR7981b-3p

Accession MIMAT0055768
Description Solanum lycopersicum sly-miR7981b-3p mature miRNA
Sequence 74 - GCCACGUAGACUAAAAAGGGGUA - 96
Evidence experimental
unknown

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195