Stem-loop sly-MIR7981d

Accession

MI0033705

Description

Solanum lycopersicum sly-MIR7981d precursor miRNA

Sequence

168533 reads, 6749.0 reads per million, 78 experiments

uauguUCGAAAUCUCAGAGACACACUUAUacuauauuaaaguccuauuaccccugaacuuauuuaauuaauauuuuuuuauccauuuuuagccuacguggcacuauccugugggccauugacuuuuuuuuucaaacuagugccacguaagcuaaaaagggauagaaaauuacuuauaaaauaaguuuaggagguaAUAGGACCUUAAUAUAGUAUAAaugugucucuaagauuucggacguuga
.(((((((((((((.(((((((((.((((((((((((((.((((((((((((((((((((((((.((...((.((((((((((.((((((((.((((((((((((.....((((...............))))...)))))))))))).)))))))).)))))))))).))...)).))))))))))))).))))))))))).)))))))))))))).))))))))).)))))))))))))...

Structure

--u             C         C              a           -             a  uaa  u          a        c            uccug    ccauug 
   auguUCGAAAUCU AGAGACACA UUAUacuauauuaa guccuauuacc ccugaacuuauuu au   ua uuuuuuaucc uuuuuagc uacguggcacua     uggg      a
   ||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||   || |||||||||| |||||||| ||||||||||||     ||||      c
   ugcaggcuuuaga ucucugugu AAUAUGAUAUAAUU CAGGAUAaugg ggauuugaauaaa ua   au aaaagauagg aaaaaucg augcaccgugau     acuu      u
agu             a         a              C           a             a  uuc  u          g        a            --caa    uuuuuu 

Annotation confidence Low

Genome context

chr6: 32938803-32939046 [-]

Mature sly-miR7981d-5p

• Accession: MIMAT0042031
• Description: Solanum lycopersicum sly-miR7981d-5p mature miRNA
• Sequence: 6 - UCGAAAUCUCAGAGACACACUUAU - 29
• Evidence: experimental ; Illumina [1]

Mature sly-miR7981d-3p

• Accession: MIMAT0055769
• Description: Solanum lycopersicum sly-miR7981d-3p mature miRNA
• Sequence: 196 - AUAGGACCUUAAUAUAGUAUAA - 217
• Evidence: experimental ; unknown

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195