Stem-loop sly-MIR10538

Accession

MI0033706

Description

Solanum lycopersicum sly-MIR10538 precursor miRNA

Sequence

gcgucAGAUUGAUAUACGUUACUCACAGUaacguuuuaaaaguaaaacguuacuuacagugacguauaucaaccuaauauug
.....((.(((((((((((((((...((((((((((((....))))))))))))...))))))))))))))).)).......

Structure

--gcguc  A               CAC            a 
       AG UUGAUAUACGUUACU   AGUaacguuuua a
       || |||||||||||||||   ||||||||||||  
       uc aacuauaugcaguga   ucauugcaaaau a
guuauaa  c               cau            g 

Annotation confidence Not enough data

Genome context

chr3: 66202190-66202271 [+]

Mature sly-miR10538

• Accession: MIMAT0042032
• Description: Solanum lycopersicum sly-miR10538 mature miRNA
• Sequence: 6 - AGAUUGAUAUACGUUACUCACAGU - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195