Stem-loop sly-MIR10539

Accession

MI0033707

Description

Solanum lycopersicum sly-MIR10539 precursor miRNA

Sequence

uuuguuggugauugugguucgaaaauugauguugauuaucccuuuauauuagucugguauuuucucuguuucaauuuauuuauucuauuuauuuuuauaaucuguuucaaauuuuuauauauuuaaauucugaacucgcauacacgugauguacaaaauguauagacacaacauuacaauCUUGGAACCACAGUUACCACCauacu
..((.(((((((((((((((.((.((((((((((......((.............)).........((...((..((((.................))))..))...))....(((((((((((......((.((((((......)))).)).)))))))))))))..))))))..)))).)).))))))))))))))).))....

Structure

--uu  u               g  a    --      auuaucccuuuauauuagucugguauuuucucuguuucaauuuauuuauucuauuuauuuuuauaaucuguuucaaauu           aaauuc  a  -    au 
    ug uggugauugugguuc aa auug  auguug                                                                               uuuauauauuu      ug ac ucgc  a
    || ||||||||||||||| || ||||  ||||||                                                                               |||||||||||      || || ||||   
    aC ACCAUUGACACCAAG UU uaac  uacaac                                                                               agauauguaaa      ac ug agug  c
ucau  C               G  C    au      -----------------------------------------------------------------------------ac           ------  a  u    ca 

Annotation confidence Not enough data

Genome context

chr12: 4194340-4194545 [-]

Mature sly-miR10539

• Accession: MIMAT0042033
• Description: Solanum lycopersicum sly-miR10539 mature miRNA
• Sequence: 181 - CUUGGAACCACAGUUACCACC - 201
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195