Accession
MI0033707
Description
Solanum lycopersicum
sly-MIR10539 precursor miRNA
Sequence
56880
reads,
712.0
reads per million, 76 experiments
uuuguUGGUGAUUGUGGUUCGAAAAUUGauguugauuaucccuuuauauuagucugguauuuucucuguuucaauuuauuuauucuauuuauuuuuauaaucuguuucaaauuuuuauauauuuaaauucugaacucgcauacacgugauguacaaaauguauagacacaacauuacaauCUUGGAACCACAGUUACCACCauacu
..((.(((((((((((((((.((.((((((((((......((.............)).........((...((..((((.................))))..))...))....(((((((((((......((.((((((......)))).)).)))))))))))))..))))))..)))).)).))))))))))))))).))....
..((.(((((((((((((((.((.((((((((((......((.............)).........((...((..((((.................))))..))...))....(((((((((((......((.((((((......)))).)).)))))))))))))..))))))..)))).)).))))))))))))))).))....
Structure
--uu u G A -- auuaucccuuuauauuagucugguauuuucucuguuucaauuuauuuauucuauuuauuuuuauaaucuguuucaaauu aaauuc a - au
ug UGGUGAUUGUGGUUC AA AUUG auguug uuuauauauuu ug ac ucgc a
|| ||||||||||||||| || |||| |||||| ||||||||||| || || ||||
aC ACCAUUGACACCAAG UU uaac uacaac agauauguaaa ac ug agug c
ucau C G C au -----------------------------------------------------------------------------ac ------ a u ca
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr12: 4194340-4194545 [-]
Database links
Mature sly-miR10539-5p
| Accession | MIMAT0055771 |
| Description | Solanum lycopersicum sly-miR10539-5p mature miRNA |
| Sequence | 6 - UGGUGAUUGUGGUUCGAAAAUUG - 28 |
| Evidence |
experimental
unknown |
Mature sly-miR10539-3p
| Accession | MIMAT0042033 |
| Description | Solanum lycopersicum sly-miR10539-3p mature miRNA |
| Sequence | 181 - CUUGGAACCACAGUUACCACC - 201 |
| Evidence |
experimental
Illumina [1] |
References
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