Stem-loop sly-MIR10540

Accession

MI0033708

Description

Solanum lycopersicum sly-MIR10540 precursor miRNA

Sequence

gguuauucgacuaauaguuauuauuucagaaagucacuuucuuuagugaagaaaaaguuggaaaucaagaaaaaagaugacuuucuaaaAUAAUAACUAUUAGUUGAAUGaccau
((((((((((((((((((((((((((.(((((((((((((.(((..(((...............)))..))))))).))))))))).))))))))))))))))))))))))))..

Structure

--                          c         -    c   ag   agaaaa 
  gguuauucgacuaauaguuauuauuu agaaaguca cuuu uuu  uga      a
  |||||||||||||||||||||||||| ||||||||| |||| |||  |||      g
  ccaGUAAGUUGAUUAUCAAUAAUAaa ucuuucagu gaaa aaa  acu      u
ua                          a         a    -   ga   aaaggu 

Annotation confidence Not enough data

Genome context

chr6: 57164-57278 [+]

Mature sly-miR10540

• Accession: MIMAT0042034
• Description: Solanum lycopersicum sly-miR10540 mature miRNA
• Sequence: 90 - AUAAUAACUAUUAGUUGAAUG - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195