Stem-loop sly-MIR171f

Accession

MI0033712

Description

Solanum lycopersicum sly-MIR171f precursor miRNA

Literature search

22 open access papers mention sly-MIR171f
(126 sentences)

Sequence

96719 reads, 1237.0 reads per million, 74 experiments

ucugaUAUUGGCCUGGUUCACUCAGAcacauauuauuuugauugauuuuacuuuUGAUUGAGCCGUGUCAAUAUCucagu
...(((((((((.(((((((.(((((.....((((.......))))......))))).))))))).))))))))).....

Structure

--ucu         C       C     -cacau    uu 
     gaUAUUGGC UGGUUCA UCAGA      auua  u
     ||||||||| ||||||| |||||      ||||  u
     CUAUAACUG GCCGAGU AGUuu      uagu  g
ugacu         U       U     ucauuu    ua 

Annotation confidence High

Genome context

chr2: 33343990-33344069 [-]

Mature sly-miR171f-5p

• Accession: MIMAT0042038
• Description: Solanum lycopersicum sly-miR171f-5p mature miRNA
• Sequence: 6 - UAUUGGCCUGGUUCACUCAGA - 26
• Evidence: experimental ; Illumina [1]

Mature sly-miR171f-3p

• Accession: MIMAT0055776
• Description: Solanum lycopersicum sly-miR171f-3p mature miRNA
• Sequence: 55 - UGAUUGAGCCGUGUCAAUAUC - 75
• Evidence: experimental ; unknown

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195