Stem-loop abu-mir-183-2

Accession

MI0033714

Description

Astatotilapia burtoni abu-mir-183-2 precursor miRNA

Sequence

502195 reads, 158563.0 reads per million, 1 experiments

UAUGGCACUGGUAGAAUUCACUGugagagcucacuaucagUGAAUUACCAUAGGGCCAUAAa
((((((..(((((..((((((((..((......))..)))))))))))))....))))))..

Structure

--      --AC     GA        ug  ag 
  UAUGGC    UGGUA  AUUCACUG  ag  c
  ||||||    |||||  ||||||||  ||   
  AUACCG    ACCAU  UAAGUgac  uc  u
aA      GGAU     --        ua  ac 

Annotation confidence High

Genome context

JH425406.1: 933843-933904 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-183-2

Mature abu-miR-183-5p

• Accession: MIMAT0042040
• Description: Astatotilapia burtoni abu-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACUG - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-183-3p

• Accession: MIMAT0059781
• Description: Astatotilapia burtoni abu-miR-183-3p mature miRNA
• Sequence: 41 - UGAAUUACCAUAGGGCCAUAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381