miRBase entry: abu-mir-183-1

Stem-loop abu-mir-183-1

Accession

MI0033715

Description

Astatotilapia burtoni abu-mir-183-1 precursor miRNA

Sequence

UAUGGCACUGGUAGAAUUCACUGucacagcacacuaucagugaauuaccauagggccauaaa
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure

--      --AC     GA        ucacag 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  auaccg    accau  uaagugac      a
aa      ggau     --        uaucac

Annotation confidence Not enough data

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Genome context

JH425488.1: 1132963-1133024 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-183-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-183

Accession	MIMAT0042040
Description	Astatotilapia burtoni abu-miR-183 mature miRNA
Sequence	1 - UAUGGCACUGGUAGAAUUCACUG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381