miRBase entry: abu-mir-199-1

Stem-loop abu-mir-199-1

Accession

MI0033734

Description

Astatotilapia burtoni abu-mir-199-1 precursor miRNA

Sequence

CCCAGUGUUCAGACUACCUGUUcaggaucuuacugguguACAGUAGUCUGCACAUUGGUUa
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))...

Structure

--C       U        C   ---    ga 
   CCAGUGU CAGACUAC UGU   Ucag  u
   ||||||| |||||||| |||   ||||  c
   GGUUACA GUCUGAUG ACA   gguc  u
aUU       C        -   ugu    au

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH425376.1: 695749-695809 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-199-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-199-5p

Accession	MIMAT0042050
Description	Astatotilapia burtoni abu-miR-199-5p mature miRNA
Sequence	1 - CCCAGUGUUCAGACUACCUGUU - 22
Evidence	experimental Illumina [1]

Mature abu-miR-199-3p

Accession	MIMAT0042051
Description	Astatotilapia burtoni abu-miR-199-3p mature miRNA
Sequence	40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381