miRBase entry: abu-mir-27b

Stem-loop abu-mir-27b

Accession

MI0033753

Description

Astatotilapia burtoni abu-mir-27b precursor miRNA

Sequence

agagcuuagcugauuggugaacagugauugauucccucuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))..

Structure

--           g    g       u  uug 
  agagcuuagcu auug ugaacag ga   a
  ||||||||||| |||| ||||||| ||   u
  UCUUGAAUCGG UGAC ACUUguu cu   u
CG           -    -       u  ccc

Annotation confidence Not enough data

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Genome context

JH425348.1: 680067-680129 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-27b

Accession	MIMAT0042059
Description	Astatotilapia burtoni abu-miR-27b mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCUGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381