Stem-loop abu-mir-27b

Accession

MI0033753

Description

Astatotilapia burtoni abu-mir-27b precursor miRNA

Sequence

19486 reads, 6153.0 reads per million, 1 experiments

AGAGCUUAGCUGAUUGGUGAACagugauugauucccucuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))..

Structure

--           G    G       u  uug 
  AGAGCUUAGCU AUUG UGAACag ga   a
  ||||||||||| |||| ||||||| ||   u
  UCUUGAAUCGG UGAC ACUUguu cu   u
CG           -    -       u  ccc 

Annotation confidence High

Genome context

JH425348.1: 680067-680129 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-27b

Mature abu-miR-27b-5p

• Accession: MIMAT0059796
• Description: Astatotilapia burtoni abu-miR-27b-5p mature miRNA
• Sequence: 1 - AGAGCUUAGCUGAUUGGUGAAC - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-27b-3p

• Accession: MIMAT0042059
• Description: Astatotilapia burtoni abu-miR-27b-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCUGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381