Stem-loop abu-mir-140

Accession

MI0033756

Description

Astatotilapia burtoni abu-mir-140 precursor miRNA

Sequence

15834 reads, 4999.0 reads per million, 1 experiments

CAGUGGUUUUACCCUAUGGUAGgugacaucaugcuguucuACCACAGGGUAGAACCACGGACG
..(((((((((((((.((((((..((((......)))))))))).))))))))))))).....

Structure

---CA             A      gu    uc 
     GUGGUUUUACCCU UGGUAG  gaca  a
     ||||||||||||| ||||||  ||||   
     CACCAAGAUGGGA ACCAuc  uugu  u
GCAGG             C      --    cg 

Annotation confidence High

Genome context

JH425417.1: 1584904-1584966 [-]

Mature abu-miR-140-5p

• Accession: MIMAT0059799
• Description: Astatotilapia burtoni abu-miR-140-5p mature miRNA
• Sequence: 1 - CAGUGGUUUUACCCUAUGGUAG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-140-3p

• Accession: MIMAT0042061
• Description: Astatotilapia burtoni abu-miR-140-3p mature miRNA
• Sequence: 41 - ACCACAGGGUAGAACCACGGACG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381