Stem-loop abu-mir-222-1

Accession

MI0033772

Description

Astatotilapia burtoni abu-mir-222-1 precursor miRNA

Sequence

ugcucaguagucaguguagauccuguggggcuggcagcAGCUACAUCUGGCUACUGGGUCUC
.((((((((((((((((((...((((.......))))...))))).)))))))))))))...

Structure

--u             -     auc    gg 
   gcucaguagucag uguag   cugu  g
   ||||||||||||| |||||   ||||  g
   UGGGUCAUCGGUC ACAUC   gacg  c
CUC             U     GAc    gu 

Annotation confidence Not enough data

Genome context

JH425355.1: 1505724-1505785 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-222-1

Mature abu-miR-222

• Accession: MIMAT0042079
• Description: Astatotilapia burtoni abu-miR-222 mature miRNA
• Sequence: 39 - AGCUACAUCUGGCUACUGGGUCUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381