Stem-loop abu-mir-144

Accession

MI0033786

Description

Astatotilapia burtoni abu-mir-144 precursor miRNA

Sequence

2308 reads, 729.0 reads per million, 1 experiments

GGAUAUCAUCUUAUACUGUAAGUuuaaaaaagagacaCUACAGUAUAGAUGAUGUACU
..(((((((((.((((((((.((((.......))))..)))))))))))))))))...

Structure

-GG         U        -A    aa 
   AUAUCAUCU AUACUGUA  GUuu  a
   ||||||||| ||||||||  ||||  a
   UGUAGUAGA UAUGACAU  caga  a
UCA         -        Ca    ga 

Annotation confidence High

Genome context

JH425418.1: 516936-516993 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-144

Mature abu-miR-144-5p

• Accession: MIMAT0042089
• Description: Astatotilapia burtoni abu-miR-144-5p mature miRNA
• Sequence: 1 - GGAUAUCAUCUUAUACUGUAAGU - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-144-3p

• Accession: MIMAT0059818
• Description: Astatotilapia burtoni abu-miR-144-3p mature miRNA
• Sequence: 38 - CUACAGUAUAGAUGAUGUACU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381