Stem-loop abu-mir-125a-2

Accession

MI0033794

Description

Astatotilapia burtoni abu-mir-125a-2 precursor miRNA

Sequence

3405 reads, 1075.0 reads per million, 1 experiments

UCCCUGAGACCCUUAACCUGUGaggucaaagcaggucaCAGGUGAGGUCCUCGGGAAC
..((((((..(((((.(((((((............))))))))))))..))))))...

Structure

-UC      AC     A       gguca 
   CCUGAG  CCUUA CCUGUGa     a
   ||||||  ||||| |||||||      
   GGGCUC  GGAGU GGACacu     a
CAA      CU     -       ggacg 

Annotation confidence High

Genome context

JH425385.1: 86281-86338 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-125a-2

Mature abu-miR-125a-5p

• Accession: MIMAT0042095
• Description: Astatotilapia burtoni abu-miR-125a-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUUAACCUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-125a-2-3p

• Accession: MIMAT0059826
• Description: Astatotilapia burtoni abu-miR-125a-2-3p mature miRNA
• Sequence: 39 - CAGGUGAGGUCCUCGGGAAC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381