miRBase entry: abu-mir-200a

Stem-loop abu-mir-200a

Accession

MI0033811

Description

Astatotilapia burtoni abu-mir-200a precursor miRNA

Sequence

caucuuaccugacagugcuggacuguacuacuguuguucUAACACUGUCUGGUAACGAUGUU
(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..

Structure

--    -     u       c    cugu  u 
  cauc uuacc gacagug ugga    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
UU    C     U       A    -ugu  u

Annotation confidence Not enough data

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Genome context

JH425562.1: 815053-815114 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-200a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-200a

Accession	MIMAT0042108
Description	Astatotilapia burtoni abu-miR-200a mature miRNA
Sequence	40 - UAACACUGUCUGGUAACGAUGUU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381