miRBase entry: abu-mir-301b-1

Stem-loop abu-mir-301b-1

Accession

MI0033814

Description

Astatotilapia burtoni abu-mir-301b-1 precursor miRNA

Sequence

uuugacaauguugcacuacuguaccauccauucuagCAGUGCAAUAGUAUUGUCAUAGC
..(((((((((((((((.(((............))).))))))))...)))))))....

Structure

--uu       ---        a   uacca 
    ugacaau   guugcacu cug     u
    |||||||   |||||||| |||      
    ACUGUUA   UAACGUGA gau     c
CGAU       UGA        C   cuuac

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH425495.1: 27462-27520 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-301b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-301b

Accession	MIMAT0042111
Description	Astatotilapia burtoni abu-miR-301b mature miRNA
Sequence	37 - CAGUGCAAUAGUAUUGUCAUAGC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381