Stem-loop abu-mir-338-1

Accession

MI0033821

Description

Astatotilapia burtoni abu-mir-338-1 precursor miRNA

Sequence

1833 reads, 579.0 reads per million, 1 experiments

AACAACAUCCUGGUGCUGCCUGAGUaguugucacaaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((...........))))))))))))).))).))))).

Structure

-     C   -         CCU    aguu 
 AACAA AUC CUGGUGCUG   GAGU    g
 ||||| ||| |||||||||   ||||    u
 UUGUU UAG GACUACGAC   CUca    c
G     U   U         ---    aaca 

Annotation confidence High

Genome context

JH425607.1: 685028-685087 [-]

Mature abu-miR-338-1-5p

• Accession: MIMAT0059836
• Description: Astatotilapia burtoni abu-miR-338-1-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature abu-miR-338-3p

• Accession: MIMAT0042116
• Description: Astatotilapia burtoni abu-miR-338-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381