miRBase entry: abu-mir-122

Stem-loop abu-mir-122


Accession
MI0033823
Description
Astatotilapia burtoni abu-mir-122 precursor miRNA


Sequence

1771 reads, 559.0 reads per million, 1 experiments
UGGAGUGUGACAAUGGUGUUUGuuuccucuucgucaAACGCCAUUAUCACACUAAAU
...(((((((.(((((((((((............))))))))))).)))))))....

Structure
-UGG       C           uuucc 
    AGUGUGA AAUGGUGUUUG     u
    ||||||| |||||||||||      
    UCACACU UUACCGCAAac     c
UAAA       A           ugcuu 


Annotation confidence High
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Genome context
JH425449.1: 1519587-1519643 [+]

Database links

Mature abu-miR-122-5p

Accession MIMAT0042117
Description Astatotilapia burtoni abu-miR-122-5p mature miRNA
Sequence 1 - UGGAGUGUGACAAUGGUGUUUG - 22
Evidence experimental
Illumina [1]

Mature abu-miR-122-3p

Accession MIMAT0059838
Description Astatotilapia burtoni abu-miR-122-3p mature miRNA
Sequence 37 - AACGCCAUUAUCACACUAAAU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381