miRBase entry: abu-mir-27d

Stem-loop abu-mir-27d

Accession

MI0033841

Description

Astatotilapia burtoni abu-mir-27d precursor miRNA

Sequence

CAGAGCUUAGUUGACUGCUGACCagggagucuugaauauuugUUCACAGUGGCUAAGUUCGUC
..((((((((((.((((.(((.((((............)))).)))))))))))))))))...

Structure

-CA          G    C   C    gaguc 
   GAGCUUAGUU ACUG UGA Cagg     u
   |||||||||| |||| ||| ||||      
   CUUGAAUCGG UGAC ACU guuu     u
CUG          -    -   U    auaag

Annotation confidence Not enough data

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Genome context

JH425365.1: 1529640-1529702 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-27d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-27d-5p

Accession	MIMAT0042130
Description	Astatotilapia burtoni abu-miR-27d-5p mature miRNA
Sequence	1 - CAGAGCUUAGUUGACUGCUGACC - 23
Evidence	experimental Illumina [1]

Mature abu-miR-27d-3p

Accession	MIMAT0042131
Description	Astatotilapia burtoni abu-miR-27d-3p mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCGUC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381