Stem-loop abu-mir-138-3

Accession

MI0033846

Description

Astatotilapia burtoni abu-mir-138-3 precursor miRNA

Sequence

919 reads, 290.0 reads per million, 1 experiments

AGCUGGUGUUGUGAAUCAGGCCGccacaguccagggaccggcuacuucccaacaccagggu
..(((((((((.(((...(((((((.(......)))..)))))..))).)))))))))...

Structure

-AG         U   UCA     --  a ag 
   CUGGUGUUG GAA   GGCCG  cc c  u
   ||||||||| |||   |||||  || |   
   gaccacaac cuu   ucggc  gg g  c
ugg         c   -ca     ca  - ac 

Annotation confidence Not enough data

Genome context

JH425619.1: 64925-64985 [+]

Mature abu-miR-138-5p

• Accession: MIMAT0042133
• Description: Astatotilapia burtoni abu-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381