miRBase entry: abu-mir-24a-3

Stem-loop abu-mir-24a-3


Accession
MI0033854
Description
Astatotilapia burtoni abu-mir-24a-3 precursor miRNA


Sequence

441 reads, 139.0 reads per million, 1 experiments
UGCCUGCUGUGCUGAUAAUCAGUGugugacgucggcUGGCUCAGUUCAGCAGGAAC
..(((((((.(((((...(((((...........))))).))))).)))))))...

Structure
-UG       U     UAA     Gugu 
   CCUGCUG GCUGA   UCAGU    g
   ||||||| |||||   |||||    a
   GGACGAC UGACU   GGUcg    c
CAA       U     --C     gcug 


Annotation confidence Not enough data
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Genome context
JH425895.1: 120973-121028 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-24a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-24a-3-5p

Accession MIMAT0059857
Description Astatotilapia burtoni abu-miR-24a-3-5p mature miRNA
Sequence 1 - UGCCUGCUGUGCUGAUAAUCAGUG - 24
Evidence experimental
Illumina [1]

Mature abu-miR-24a-3p

Accession MIMAT0042140
Description Astatotilapia burtoni abu-miR-24a-3p mature miRNA
Sequence 37 - UGGCUCAGUUCAGCAGGAAC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381