Stem-loop abu-mir-29b-1

Accession

MI0033884

Description

Astatotilapia burtoni abu-mir-29b-1 precursor miRNA

Sequence

cugguuucacguggugguuuagaugugugcugcucuugucUAGCACCAUUUGAAAUCAGUGU
(((((((((.((((((..((((((..(.......)..)))))))))))).)))))))))...

Structure

---         c      gu      gu ug 
   cugguuuca guggug  uuagau  g  c
   ||||||||| ||||||  ||||||  |  u
   GACUAAAGU UACCAC  GAUcug  c  g
UGU         U      --      uu uc 

Annotation confidence Not enough data

Genome context

JH425506.1: 731679-731740 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-29b-1

Mature abu-miR-29b

• Accession: MIMAT0042168
• Description: Astatotilapia burtoni abu-miR-29b mature miRNA
• Sequence: 41 - UAGCACCAUUUGAAAUCAGUGU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381