miRBase entry: abu-mir-29b-1

Stem-loop abu-mir-29b-1

Accession

MI0033884

Description

Astatotilapia burtoni abu-mir-29b-1 precursor miRNA

Sequence

cugguuucacguggugguuuagaugugugcugcucuugucUAGCACCAUUUGAAAUCAGUGU
(((((((((.((((((..((((((..(.......)..)))))))))))).)))))))))...

Structure

---         c      gu      gu ug 
   cugguuuca guggug  uuagau  g  c
   ||||||||| ||||||  ||||||  |  u
   GACUAAAGU UACCAC  GAUcug  c  g
UGU         U      --      uu uc

Annotation confidence Not enough data

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Genome context

JH425506.1: 731679-731740 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-29b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-29b

Accession	MIMAT0042168
Description	Astatotilapia burtoni abu-miR-29b mature miRNA
Sequence	41 - UAGCACCAUUUGAAAUCAGUGU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381