miRBase entry: abu-mir-24a-1

Stem-loop abu-mir-24a-1


Accession
MI0033885
Description
Astatotilapia burtoni abu-mir-24a-1 precursor miRNA


Sequence

434 reads, 137.0 reads per million, 1 experiments
GUGCCUACUGAGCUGAUAAUCAguccuacagaaucacUGGCUCAGUUCAGCAGGAAC
...(((.(((((((((...(((((...........))))).))))))))).)))...

Structure
GUG   A         UAA     ccua 
   CCU CUGAGCUGA   UCAgu    c
   ||| |||||||||   |||||    a
   GGA GACUUGACU   GGUca    g
CAA   C         --C     cuaa 


Annotation confidence Not enough data
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Genome context
JH425348.1: 683544-683600 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-24a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-24a-1-5p

Accession MIMAT0059856
Description Astatotilapia burtoni abu-miR-24a-1-5p mature miRNA
Sequence 1 - GUGCCUACUGAGCUGAUAAUCA - 22
Evidence experimental
Illumina [1]

Mature abu-miR-24a-3p

Accession MIMAT0042140
Description Astatotilapia burtoni abu-miR-24a-3p mature miRNA
Sequence 38 - UGGCUCAGUUCAGCAGGAAC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381