Stem-loop abu-mir-23a-1

Accession

MI0033887

Description

Astatotilapia burtoni abu-mir-23a-1 precursor miRNA

Sequence

ggaauuccuggcagagugauuuuuuuuaaacuagaggacugaAUCACAUUGCCAGGGAUUUCCA
((((((((((((((.((((((((((((......)))))..))))))).))))))))))))))..

Structure

--              a       --     aa 
  ggaauuccuggcag gugauuu  uuuuu  a
  |||||||||||||| |||||||  |||||   
  CUUUAGGGACCGUU CACUAag  aggag  c
AC              A       uc     au 

Annotation confidence Not enough data

Genome context

JH425895.1: 119336-119399 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-23a-1

Mature abu-miR-23a

• Accession: MIMAT0042122
• Description: Astatotilapia burtoni abu-miR-23a mature miRNA
• Sequence: 43 - AUCACAUUGCCAGGGAUUUCCA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381