miRBase entry: abu-mir-301b-2

Stem-loop abu-mir-301b-2

Accession

MI0033888

Description

Astatotilapia burtoni abu-mir-301b-2 precursor miRNA

Sequence

gcuuugacgauguugcacuacuguaucaucgcugaagCAGUGCAAUAGUAUUGUCAUAGC
(((.(((((((((((((((...((.(((....))).))))))))))...))))))).)))

Structure

   u       ---        acu  a   u 
gcu ugacgau   guugcacu   gu uca c
||| |||||||   ||||||||   || |||  
CGA ACUGUUA   UAACGUGA   Cg agu g
   U       UGA        ---  a   c

Annotation confidence Not enough data

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Genome context

JH426012.1: 181937-181996 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-301b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-301b

Accession	MIMAT0042111
Description	Astatotilapia burtoni abu-miR-301b mature miRNA
Sequence	38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381