Stem-loop abu-mir-301b-2

Accession

MI0033888

Description

Astatotilapia burtoni abu-mir-301b-2 precursor miRNA

Sequence

1888 reads, 596.0 reads per million, 1 experiments

GCUUUGACGAUGUUGCACUACUguaucaucgcugaagCAGUGCAAUAGUAUUGUCAUAGC
(((.(((((((((((((((...((.(((....))).))))))))))...))))))).)))

Structure

   U       ---        ACU  a   u 
GCU UGACGAU   GUUGCACU   gu uca c
||| |||||||   ||||||||   || |||  
CGA ACUGUUA   UAACGUGA   Cg agu g
   U       UGA        ---  a   c 

Annotation confidence Not enough data

Genome context

JH426012.1: 181937-181996 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-301b-2

Mature abu-miR-301b-2-5p

• Accession: MIMAT0059833
• Description: Astatotilapia burtoni abu-miR-301b-2-5p mature miRNA
• Sequence: 1 - GCUUUGACGAUGUUGCACUACU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-301b-3p

• Accession: MIMAT0042111
• Description: Astatotilapia burtoni abu-miR-301b-3p mature miRNA
• Sequence: 38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381