Stem-loop abu-mir-150

Accession

MI0033981

Description

Astatotilapia burtoni abu-mir-150 precursor miRNA

Sequence

561 reads, 177.0 reads per million, 1 experiments

ACUCCCAAUCCUUGUACCAGUGUCUugacaccagugaCGCUGGACGGGUUUUGGGGGGGcu
.(((((((..(((((.(((((((((((....))).)))))))))))))..)))))))....

Structure

---A       UC     A        -   a 
    CUCCCAA  CUUGU CCAGUGUC Uug c
    |||||||  ||||| |||||||| |||  
    GGGGGUU  GGGCA GGUCGCag gac a
ucGG       UU     -        u   c 

Annotation confidence High

Genome context

JH425402.1: 1757108-1757168 [-]

Mature abu-miR-150-5p

• Accession: MIMAT0042248
• Description: Astatotilapia burtoni abu-miR-150-5p mature miRNA
• Sequence: 1 - ACUCCCAAUCCUUGUACCAGUGUCU - 25
• Evidence: experimental ; Illumina [1]

Mature abu-miR-150-3p

• Accession: MIMAT0059883
• Description: Astatotilapia burtoni abu-miR-150-3p mature miRNA
• Sequence: 38 - CGCUGGACGGGUUUUGGGGGGG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381