Stem-loop abu-mir-146

Accession

MI0033983

Description

Astatotilapia burtoni abu-mir-146 precursor miRNA

Sequence

54946 reads, 17349.0 reads per million, 1 experiments

UGAGAACUGAAUUCCAUAGAUGgugacaucuucaggugucAUCUAUGGGCUCAGUUCUUCU
.(((((((((..((((((((...(((((((....))))))))))))))).)))))))))..

Structure

-U         AU        UGg       u 
  GAGAACUGA  UCCAUAGA   ugacauc u
  |||||||||  ||||||||   |||||||  
  UUCUUGACU  GGGUAUCU   Acugugg c
UC         -C        ---       a 

Annotation confidence High

Genome context

JH425615.1: 371298-371358 [-]

Mature abu-miR-146-5p

• Accession: MIMAT0042250
• Description: Astatotilapia burtoni abu-miR-146-5p mature miRNA
• Sequence: 1 - UGAGAACUGAAUUCCAUAGAUG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-146-3p

• Accession: MIMAT0059884
• Description: Astatotilapia burtoni abu-miR-146-3p mature miRNA
• Sequence: 41 - AUCUAUGGGCUCAGUUCUUCU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381